PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g49250.1.p
Common NameBRADI_2g49250, LOC104582860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 209aa    MW: 21939.8 Da    PI: 8.8985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g49250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-055173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F+++  L  H  +H
  Bradi2g49250.1.p 51 FRCSVCGKAFPSHQALGGHKASH 73
                      89*************99998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.3E-125075IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-65173No hitNo description
PROSITE profilePS5015710.8245178IPR007087Zinc finger, C2H2
SMARTSM003550.00685173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6104131No hitNo description
PROSITE profilePS501579.411109131IPR007087Zinc finger, C2H2
SMARTSM003550.65109131IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-11109132IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMNMSHDDYV SLCLMALASA QSGGCGQAVE TRQMQWLQTS TTAAPPCELR FRCSVCGKAF  60
PSHQALGGHK ASHRKRTAPL PVRVISASSS AEETTTASSN TTSGAGGKHR CSVCHRSFAT  120
GQALGGHKRC HYWDGLSVSL SPTATGSGSG SGSCVRDFDL NLVPAPEMAA AAAGMRRWGE  180
EEEVQSPLPI KKRRLLSSPS SKLNLTTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687313e-36EU968731.1 Zea mays clone 323782 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754979.11e-152PREDICTED: zinc finger protein ZAT6-like
TrEMBLI1HRB81e-152I1HRB8_BRADI; Uncharacterized protein
STRINGBRADI2G49250.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-25zinc-finger protein 2